Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4246706_4249405_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4246706 - 4249405

Intron Length:

2700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTAAAT

U12 Branch Point Sequence:

TCTTTTTTAAAG

Flanking Amino Acid:

TEALQCLSYSGIKIVIQPDS

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

1.2

81.4

33.4

Major BPS

69.8

0.49

1.1

75.5

35.2

Major PPT

83.2

0.75

0.9

85.5

26.4

Minor 5ss

38.3

-1.3

2.8

51.3

45.1

Minor BPS

66.4

0.38

1.4

67.62

40.4

Associated Gene:

Gene:

MALT1

Ensembl Gene ID:

ENSAPLG00000010083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037058

4225547 - 4250938

25392

ENSAPLT00000026365

4225547 - 4250938

25392

ENSAPLT00000010529

4225547 - 4250938

25392