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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42468924_42470687_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42468924 - 42470687
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTGTCTTATAT
Flanking Amino Acid:
LFDYPQLNFENICSYIFMPF
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
80
0.67
0.9
73.8
40.5
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
59.9
0.39
1.8
80.55
41.4

Associated Gene:

Gene:
SLC28A3
Ensembl Gene ID:
ENSAPLG00000010433
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045922
42461232 - 42504365
43134
ENSAPLT00000010888
42461232 - 42504365
43134