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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42470857_42472167_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
42470857 - 42472167
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTGATAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
TLKSDLNMAKSESKNLLEAA
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
59.5
0.22
1.2
59.5
40
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
SLC28A3
Ensembl Gene ID:
ENSAPLG00000010433
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045922
42461232 - 42504365
43134
ENSAPLT00000010888
42461232 - 42504365
43134