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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42473739_42474811_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42473739 - 42474811
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACT
Flanking Amino Acid:
VAAGNIFVGQTESPLLVRPY
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
78.3
35.2
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
65.3
0.56
1.7
82.67
39.4

Associated Gene:

Gene:
SLC28A3
Ensembl Gene ID:
ENSAPLG00000010433
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045922
42461232 - 42504365
43134
ENSAPLT00000010888
42461232 - 42504365
43134