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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42476017_42481430_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42476017 - 42481430
Intron Length:
5414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCTAAATC
Flanking Amino Acid:
KYTDHLFAFKVLPIVVFFST
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.3
0.44
1
68.5
41.2
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
65.8
0.48
1.6
74.33
36.8

Associated Gene:

Gene:
SLC28A3
Ensembl Gene ID:
ENSAPLG00000010433
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010888
42461232 - 42504365
43134