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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42476017_42482997_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42476017 - 42482997
Intron Length:
6981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCTAAATC
Flanking Amino Acid:
VFNWLGIQIQVLPIVVFFST
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.4
32.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.3
0.44
1
68.5
41.2
Minor 5ss
44.1
-0.6
2.9
58.3
46.6
Minor BPS
65.8
0.48
1.6
74.33
36.8

Associated Gene:

Gene:
SLC28A3
Ensembl Gene ID:
ENSAPLG00000010433
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045922
42461232 - 42504365
43134