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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4253026_4262262_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4253026 - 4262262
Intron Length:
9237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019908
4252972 - 4317650
64679
ENSAPLT00000019613
4252972 - 4291494
38523
ENSAPLT00000043466
4252972 - 4318633
65662
ENSAPLT00000033581
4252972 - 4291494
38523