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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42595346_42613169_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42595346 - 42613169
Intron Length:
17824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
GCTTTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATACTT
Flanking Amino Acid:
RSAEGDNVTEIYIANQQKLE
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.9
73.4
35.9
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
56.2
0.27
1.9
78.67
37.9

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042947
42593076 - 42790771
197696
ENSAPLT00000036993
42593076 - 42791685
198610
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000043393
42593076 - 42791685
198610