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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42613547_42619607_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42613547 - 42619607
Intron Length:
6061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCCCAATTAATG
Flanking Amino Acid:
AFAKNVNLQYINLSRNKLSS
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.4
0.8
0.6
81.6
23.4
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
47.1
-0.3
1.8
50.83
43.4

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000043393
42593076 - 42791685
198610
ENSAPLT00000042947
42593076 - 42790771
197696
ENSAPLT00000036993
42593076 - 42791685
198610