About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42619677_42623272_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42619677 - 42623272
Intron Length:
3596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
KPFRHLGLSDLILVDNPFKC
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
65.7
40.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
37.4
-1.4
3
54.6
42.6
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000043393
42593076 - 42791685
198610
ENSAPLT00000042947
42593076 - 42790771
197696
ENSAPLT00000036993
42593076 - 42791685
198610