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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42623428_42637386_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42623428 - 42637386
Intron Length:
13959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATATTC
5'SS Class:
major
3'SS Sequence:
TTTTCTATCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATCACA
Flanking Amino Acid:
ALMDMKVPNCDLPSANLSNY
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
69.1
36.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.5
0.8
0.7
80.8
29.6
Minor 5ss
43.1
-0.8
3.1
60.7
43.8
Minor BPS
60.9
0.34
2
80.03
36.1

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036993
42593076 - 42791685
198610
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000043393
42593076 - 42791685
198610
ENSAPLT00000042947
42593076 - 42790771
197696