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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42642579_42652162_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42642579 - 42652162
Intron Length:
9584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTCTAAG
Flanking Amino Acid:
DAHFMSVPGDEYETTPNDLG
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84
0.76
0.9
90.5
22.3
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
46.8
-0.3
2
60.05
41.8

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047802
42593076 - 42790771
197696