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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42647587_42652162_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42647587 - 42652162
Intron Length:
4576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTCTAAG
Flanking Amino Acid:
SGPIVDPDVYEYETTPNDLG
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
78.6
34.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84
0.76
0.9
90.5
22.3
Minor 5ss
47.3
-0.3
2.7
65.1
41.4
Minor BPS
46.8
-0.3
2
60.05
41.8

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042947
42593076 - 42790771
197696
ENSAPLT00000036993
42593076 - 42791685
198610
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000043393
42593076 - 42791685
198610