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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42653878_42673945_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42653878 - 42673945
Intron Length:
20068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CATTCCATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATTGCATTAATG
Flanking Amino Acid:
FGRHSKFGMKVHGEVKGVGL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76.5
0.6
0.9
66.7
39
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
60.7
0.2
1.8
66.91
41

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036993
42593076 - 42791685
198610
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000043393
42593076 - 42791685
198610