About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4272861_4272945_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4272861 - 4272945
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTCTTGAAAA
Flanking Amino Acid:
VTAEFNLTSEVLEHLSSFQN
Intron Amino Acid Position:
1531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.8
0.74
0.7
78
30.8
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
58.7
0.27
1.6
66.32
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019908
4252972 - 4317650
64679
ENSAPLT00000019613
4252972 - 4291494
38523
ENSAPLT00000043466
4252972 - 4318633
65662
ENSAPLT00000033581
4252972 - 4291494
38523