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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42745261_42751316_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42745261 - 42751316
Intron Length:
6056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACAT
Flanking Amino Acid:
EQDKILVAVKTLKDASDNAR
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
75.1
0.57
0.9
69
37
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
49.6
0.05
2
69.15
47.4

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042947
42593076 - 42790771
197696
ENSAPLT00000036993
42593076 - 42791685
198610
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000010449
42595125 - 42772226
177102
ENSAPLT00000043393
42593076 - 42791685
198610