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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4277827_4277949_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4277827 - 4277949
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTCTTTGTAATA
Flanking Amino Acid:
VQKNYKLALQECYVQNTARE
Intron Amino Acid Position:
1635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.8
0.49
0.9
66.4
38.6
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
49.4
-0
2
61.33
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019908
4252972 - 4317650
64679
ENSAPLT00000019613
4252972 - 4291494
38523
ENSAPLT00000043466
4252972 - 4318633
65662
ENSAPLT00000033581
4252972 - 4291494
38523