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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4278039_4281027_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4278039 - 4281027
Intron Length:
2989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTTTTCACC
Flanking Amino Acid:
EPLEGFGEVPEIIPIFLVHR
Intron Amino Acid Position:
1664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84
0.76
0.8
81.3
29.1
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
63
0.39
1.7
74.26
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019908
4252972 - 4317650
64679
ENSAPLT00000019613
4252972 - 4291494
38523
ENSAPLT00000043466
4252972 - 4318633
65662
ENSAPLT00000033581
4252972 - 4291494
38523