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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42789759_42790585_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42789759 - 42790585
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GATCCTTTGATT
Flanking Amino Acid:
QPWYQLSNNEVIECITQGRV
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.7
0.67
0.8
78
36.2
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
64.8
0.55
1.2
74.1
36.6

Associated Gene:

Gene:
NTRK2
Ensembl Gene ID:
ENSAPLG00000009998
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042947
42593076 - 42790771
197696
ENSAPLT00000036993
42593076 - 42791685
198610
ENSAPLT00000022793
42593076 - 42791685
198610
ENSAPLT00000047802
42593076 - 42790771
197696
ENSAPLT00000043393
42593076 - 42791685
198610