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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42798736_42798936_R

Intron Information:

Intron Rank:
129066
Intron Class:
major
Intron Phase:
Intron Coordinates:
42798736 - 42798936
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AAGACTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.7
0.49
0.9
62.3
38.8
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
52.6
0.08
1.6
59.63
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023734
42798627 - 42801607
2981