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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42799106_42801099_R

Intron Information:

Intron Rank:
129067
Intron Class:
major
Intron Phase:
Intron Coordinates:
42799106 - 42801099
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTGTCATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.1
0.79
0.7
78.2
30.6
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
54
0.12
2.1
68.14
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016600
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023734
42798627 - 42801607
2981