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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_427992_428322_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
427992 - 428322
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTATGGTT
5'SS Class:
weak_major
3'SS Sequence:
CTGTCTCAGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTCCCATTAATT
Flanking Amino Acid:
ETKNTCRPCTGRVVFMGDDT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.3
61.8
42.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
53.9
0.09
1.2
56.9
38.1
Minor 5ss
31.1
-2.2
3.6
40.2
45.6
Minor BPS
61.3
0.43
1.7
74.4
42.6

Associated Gene:

Gene:
PIGO
Ensembl Gene ID:
ENSAPLG00000016451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030364
427885 - 439016
11132