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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4281246_4284077_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4281246 - 4284077
Intron Length:
2832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
GTTTCCTTGATG
Flanking Amino Acid:
NGSLLVTDLQGVGMKLTDVG
Intron Amino Acid Position:
1737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
72.4
0.5
0.9
66.4
40.5
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
76.6
0.69
1.2
75.4
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033581
4252972 - 4291494
38523
ENSAPLT00000019908
4252972 - 4317650
64679
ENSAPLT00000019613
4252972 - 4291494
38523
ENSAPLT00000043466
4252972 - 4318633
65662