Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4284127_4290011_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4284127 - 4290011

Intron Length:

5885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTGCTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAA

U12 Branch Point Sequence:

TTTGTTGCTACA

Flanking Amino Acid:

TDVGIATLAKGYKGFKGNCS

Intron Amino Acid Position:

1753

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

73.7

32.5

Major BPS

74.6

0.61

65.6

41.4

Major PPT

82.4

0.73

0.9

76.6

37.7

Minor 5ss

26.1

-2.7

2.9

22.6

37.5

Minor BPS

40.3

-0.7

2.3

58.13

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033581

4252972 - 4291494

38523

ENSAPLT00000019613

4252972 - 4291494

38523