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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42882441_42882720_F

Intron Information:

Intron Rank:
136722
Intron Class:
major
Intron Phase:
Intron Coordinates:
42882441 - 42882720
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTCCCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
70.7
0.47
1
71.5
33.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
49.5
-0.1
2
65.66
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023644
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033330
42882101 - 42883811
1711