Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42958114_42958793_R

Intron Information:

Intron Rank:

148056

Intron Class:

major

Intron Phase:

Intron Coordinates:

42958114 - 42958793

Intron Length:

680

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTATATATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CTTTTCTTATAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

76.9

33.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

77.8

0.63

0.9

73.7

Minor 5ss

31.4

-2.1

3.1

39.2

46.2

Minor BPS

63.5

0.5

1.7

80.55

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032128

42950885 - 42959239

8355