About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_429771_430636_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
429771 - 430636
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAAAA
5'SS Class:
major
3'SS Sequence:
ATCGTGGTGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTCCTTATCG
Flanking Amino Acid:
KKLTQMNEMLRSLVEHLGND
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
74.9
29.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
58.5
0.19
1.2
49.9
47.5
Minor 5ss
27.4
-2.6
2.7
31.2
42.4
Minor BPS
66.7
0.38
1.7
68.52
44.7

Associated Gene:

Gene:
PIGO
Ensembl Gene ID:
ENSAPLG00000016451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030364
427885 - 439016
11132