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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42996342_42998540_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42996342 - 42998540
Intron Length:
2199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGGAT
U12 Branch Point Sequence:
TCTTTCGGATTA
Flanking Amino Acid:
CDLMEDPGYRTLPKILSQTA
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
66.4
0.41
1.4
65.3
43.7
Major PPT
83.6
0.76
0.8
77.5
36.5
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
43.9
-0.4
2.2
59.01
41.6

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987
ENSAPLT00000042098
42978002 - 43041225
63224
ENSAPLT00000025918
42992378 - 43041128
48751