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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42998673_42999022_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42998673 - 42999022
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATATGGTTAATT
Flanking Amino Acid:
YLAAIKRLPLVYCDYHGHSR
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
69.9
0.45
1
63.9
41.8
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
50.6
0.1
2.4
74.92
42.2

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042098
42978002 - 43041225
63224
ENSAPLT00000025918
42992378 - 43041128
48751
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987