About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_42999153_43000601_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42999153 - 43000601
Intron Length:
1449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTGCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCCCCTGCAAT
Flanking Amino Acid:
MLNPDGVINGNHRCSLSGED
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
62.1
0.27
0.9
57.7
31.9
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
48.6
-0
2.1
71.81
44.5

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025918
42992378 - 43041128
48751
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987
ENSAPLT00000042098
42978002 - 43041225
63224