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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4300052_4317458_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4300052 - 4317458
Intron Length:
17407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATTTCGCTACCT
Flanking Amino Acid:
ACLDLLAEDTKDSFKCYFRS
Intron Amino Acid Position:
1831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82
0.72
0.7
76.2
32.4
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
48.3
-0
2.5
79.02
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043466
4252972 - 4318633
65662
ENSAPLT00000019908
4252972 - 4317650
64679