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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43000783_43001559_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43000783 - 43001559
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATTTTGCAACT
Flanking Amino Acid:
SNYYEHICQFRNRPYIFLSA
Intron Amino Acid Position:
908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
82.4
0.73
0.7
81
31.1
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
50.6
0.1
2.2
76.67
40.2

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987
ENSAPLT00000042098
42978002 - 43041225
63224
ENSAPLT00000025918
42992378 - 43041128
48751