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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43011184_43011939_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43011184 - 43011939
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
GGTGTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TGAAGATTAATT
Flanking Amino Acid:
VEDDKDQHFKNDDIETDINK
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
73.5
0.53
1
69.2
46.1
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
48.5
-0
2
67.88
42.6

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025918
42992378 - 43041128
48751
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987
ENSAPLT00000042098
42978002 - 43041225
63224