About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43012038_43013926_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43012038 - 43013926
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTCA
5'SS Class:
major
3'SS Sequence:
TTTTATATCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCTTACAAAACT
Flanking Amino Acid:
VAQLYNLPPDVDDVVDESDD
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
63.7
36.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.8
74.6
34.5
Minor 5ss
43.2
-0.7
3
53.2
46
Minor BPS
47.8
-0
2.1
69.53
46.9

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042098
42978002 - 43041225
63224
ENSAPLT00000025918
42992378 - 43041128
48751
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987