Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43014765_43017012_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43014765 - 43017012

Intron Length:

2248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAAATAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

LDTLAALLKSKTNARRAVDR

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.8

0.42

1.1

69.6

38.9

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

AGTPBP1

Ensembl Gene ID:

ENSAPLG00000001395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025918

42992378 - 43041128

48751

ENSAPLT00000022194

42978002 - 43041225

63224

ENSAPLT00000001461

42990778 - 43026764

35987

ENSAPLT00000042098

42978002 - 43041225

63224