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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43018663_43020848_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43018663 - 43020848
Intron Length:
2186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGATG
5'SS Class:
major
3'SS Sequence:
TTAACTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTGTTTAACT
Flanking Amino Acid:
HTLLAKIGPKAVNAVSLGKN
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
71.4
39.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.7
0.71
0.9
73.4
41.6
Minor 5ss
30.5
-2.2
3.2
39.3
46.2
Minor BPS
73
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042098
42978002 - 43041225
63224