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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43021399_43021772_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43021399 - 43021772
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTAAATTAATC
Flanking Amino Acid:
GIEVILSTLENTRDPQTILN
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.3
0.97
0.7
89.4
25.4
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
52.6
0.06
1.8
65.42
40

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042098
42978002 - 43041225
63224
ENSAPLT00000025918
42992378 - 43041128
48751
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987