About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43021841_43022620_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43021841 - 43022620
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATACC
5'SS Class:
major
3'SS Sequence:
TTCTTACTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTG
Flanking Amino Acid:
SKILHLVQSQEKTRKEMTSK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.1
37.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
76.8
0.6
1
73.7
35.8
Minor 5ss
35.9
-1.6
2.7
38.5
39.5
Minor BPS
68.5
0.44
1.6
74.4
38.6

Associated Gene:

Gene:
AGTPBP1
Ensembl Gene ID:
ENSAPLG00000001395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022194
42978002 - 43041225
63224
ENSAPLT00000001461
42990778 - 43026764
35987
ENSAPLT00000042098
42978002 - 43041225
63224
ENSAPLT00000025918
42992378 - 43041128
48751