Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43026804_43041095_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43026804 - 43041095

Intron Length:

14292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTTGC

5'SS Class:

major

3'SS Sequence:

TAATATCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TAATATGTAACT

Flanking Amino Acid:

EKIPGVKDEQVIRDGDLKNK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.2

65.2

41.8

Major BPS

90.7

1.01

0.7

19.9

Major PPT

76.2

0.59

66.6

44.3

Minor 5ss

35.5

-1.6

2.9

44.6

43.2

Minor BPS

52.1

0.14

2.2

75.03

41.4

Associated Gene:

Gene:

AGTPBP1

Ensembl Gene ID:

ENSAPLG00000001395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022194

42978002 - 43041225

63224

ENSAPLT00000042098

42978002 - 43041225

63224

ENSAPLT00000025918

42992378 - 43041128

48751