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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43046620_43046704_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
43046620 - 43046704
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTCACA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AGGTAATTAAAT
Flanking Amino Acid:
MYLSFGLFEAMSA
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.18
1.3
56.5
42.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79
0.65
0.7
78
30.8
Minor 5ss
34.7
-1.7
2.9
42
44.2
Minor BPS
49.3
0.02
1.9
67.34
42.3

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048478
43046609 - 43067689
21081