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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_430469_430636_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
430469 - 430636
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCATCCATT
5'SS Class:
weak_major
3'SS Sequence:
ATCGTGGTGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTCCTTATCG
Flanking Amino Acid:
QMNEMLSSFLKSLVEHLGND
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.17
1.3
66.6
44.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
58.5
0.19
1.2
49.9
47.5
Minor 5ss
48.3
-0.1
3.8
74.4
35.7
Minor BPS
66.7
0.38
1.7
68.52
44.7

Associated Gene:

Gene:
PIGO
Ensembl Gene ID:
ENSAPLG00000016451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032766
426470 - 435458
8989