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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43051409_43053171_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43051409 - 43053171
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTGCAGGTAACT
Flanking Amino Acid:
EERDPEVELETSAVAEAQKL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
81.5
32
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.4
0.68
0.8
76.7
32
Minor 5ss
35.6
-1.6
3.3
48.9
41.5
Minor BPS
41.2
-0.5
2.6
63.11
46.4

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044865
43042334 - 43067689
25356