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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43053287_43053780_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43053287 - 43053780
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTATGTGCAGCT
Flanking Amino Acid:
IQAQNDTTKGDHPIMMGFEP
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
73
0.52
0.7
71.6
26.4
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
40
-0.6
2.5
64.66
45.9

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044444
43042334 - 43068060
25727
ENSAPLT00000016584
43042139 - 43067689
25551
ENSAPLT00000048478
43046609 - 43067689
21081
ENSAPLT00000044865
43042334 - 43067689
25356