Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43053960_43055047_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

43053960 - 43055047

Intron Length:

1088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TAAATATAACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTTTCCTAAATA

Flanking Amino Acid:

VNLTNLHCILDFFCEFSEQS

Intron Amino Acid Position:

353

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

83.5

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

53.4

0.08

1.1

46.1

44.6

Minor 5ss

45.5

-0.5

2.9

63.6

Minor BPS

0.87

1.5

87.11

31.6

Associated Gene:

Gene:

NAA35

Ensembl Gene ID:

ENSAPLG00000015844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044444

43042334 - 43068060

25727

ENSAPLT00000016584

43042139 - 43067689

25551

ENSAPLT00000048478

43046609 - 43067689

21081

ENSAPLT00000044865

43042334 - 43067689

25356