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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43055108_43056257_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43055108 - 43056257
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTTTCTAAAAA
Flanking Amino Acid:
PCVLSRSLLQTTFLVDNKKV
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
87.9
27.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.7
0.94
0.7
89.8
25.4
Minor 5ss
26.5
-2.7
3.8
42.1
44.5
Minor BPS
61
0.34
1.8
72.99
38.7

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044444
43042334 - 43068060
25727
ENSAPLT00000016584
43042139 - 43067689
25551
ENSAPLT00000048478
43046609 - 43067689
21081
ENSAPLT00000044865
43042334 - 43067689
25356