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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43060525_43062287_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43060525 - 43062287
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TGGTATGTAACA
Flanking Amino Acid:
YSMHEYYYIYWYLSEFLYAW
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
72.8
0.57
1
81
30.3
Major PPT
82.2
0.72
0.7
77.8
31
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
49
-0
2.2
64.71
41.8

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016584
43042139 - 43067689
25551
ENSAPLT00000048478
43046609 - 43067689
21081
ENSAPLT00000044865
43042334 - 43067689
25356
ENSAPLT00000044444
43042334 - 43068060
25727