About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43064262_43065750_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43064262 - 43065750
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
PPPVHYLQFKEMSDLNKYSP
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
63.8
0.31
1.1
59.1
41.4
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044444
43042334 - 43068060
25727
ENSAPLT00000016584
43042139 - 43067689
25551
ENSAPLT00000048478
43046609 - 43067689
21081
ENSAPLT00000044865
43042334 - 43067689
25356