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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43065874_43066972_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43065874 - 43066972
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TCCACTTGAAAA
Flanking Amino Acid:
LENIPNPDHEVSRILKVAKP
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
74
0.54
0.9
73.6
37
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
49.6
-0
1.6
57.97
41.5

Associated Gene:

Gene:
NAA35
Ensembl Gene ID:
ENSAPLG00000015844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044444
43042334 - 43068060
25727
ENSAPLT00000016584
43042139 - 43067689
25551
ENSAPLT00000048478
43046609 - 43067689
21081
ENSAPLT00000044865
43042334 - 43067689
25356