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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43072193_43072498_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43072193 - 43072498
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAA
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
KQAALAGIANVQNSDENMKN
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
65.4
0.38
1.1
67.5
35
Major PPT
74.5
0.55
0.9
75.8
33
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
GOLM1
Ensembl Gene ID:
ENSAPLG00000016726
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032792
43070414 - 43095166
24753