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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43072610_43074852_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43072610 - 43074852
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTGGTAGC
5'SS Class:
major
3'SS Sequence:
AATGTTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTCATTTAATG
Flanking Amino Acid:
KQSASPPGKADNQAQDALKD
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.2
60.9
43.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.2
0.66
0.9
70
45
Minor 5ss
31.2
-2.2
2.8
34.6
35.1
Minor BPS
53.5
-0
1.6
55.91
39.9

Associated Gene:

Gene:
GOLM1
Ensembl Gene ID:
ENSAPLG00000016726
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032792
43070414 - 43095166
24753